A generalized lineage nomenclature system enables scalable viral genomic surveillance, exemplified by defining 21 chikungunya virus lineages across 8 founding lineages.
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COVID-19 epidemiological studies
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Delphy achieves 100,000-sequence Bayesian phylogenetic analysis within a day, offering 100 to 1000-fold speed improvements over traditional methods for outbreak datasets.
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Pneumococcal population structure determines how air pollution influences invasive disease risk, with specific lineages and serotypes showing immediate effects.
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School-level measles transmission potential in the US became supercritical in 2022-2023, with vaccination susceptibility doubling to 10%, surpassing epidemic thresholds unnoticed by current surveillance.
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