Research area · week to 3 Oct 2026

Microbial Community Ecology and Physiology

Moving in bioRxiv, Environmental research, Applied and environmental microbiology, Environmental pollution, Nature Reviews Microbiology, mSystems.

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Latest in Microbial Community Ecology and Physiology

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Tectonic setting shapes microbial biosynthetic potential across global geothermal environments
bioRxiv · 2 Oct 2026 · Preprint
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https://jclub.com.au/a/10.1101/2025.09.14.675129
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Shifts in soil microbial diversity and greenhouse gas emission dynamics.
Environmental research · 1 Oct 2026 · Journal Article
Soil microbial diversity shifts during land reclamation significantly influence greenhouse gas emissions, with bacteria, fungi, and protists responding differently over 15 years.
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https://jclub.com.au/a/42580387
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Long-term PFOA and cadmium Co-contamination alters soil carbon, nitrogen, and phosphorus cycling: Insights from metagenomics and metabolomics.
Environmental research · 1 Oct 2026 · Journal Article
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https://jclub.com.au/a/42617678
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Impacts of sewage treatment works versus diffuse pollution on bacterial water quality at rural wild swimming sites.
Environmental pollution · 1 Oct 2026 · Journal Article
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https://jclub.com.au/a/42392298
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Seasonal phenology and spatiotemporal persistence of fecal coliform contamination in shellfish-harvesting waters of Canada's Pacific and Atlantic coasts.
Environmental pollution · 1 Oct 2026 · Journal Article
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https://jclub.com.au/a/42385825
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Salinity-induced dynamics of antibiotic resistance genes across size-fractionated lifestyles: Microbial community coalescence revealed by a comprehensive source-sink framework.
Environmental pollution · 1 Oct 2026 · Journal Article
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https://jclub.com.au/a/42385831
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Heavy-metal stress shapes habitat-specific microbial survival strategies in estuarine environments.
Environmental research · 1 Oct 2026 · Journal Article
Heavy-metal pollution drives habitat-specific microbial survival strategies, with sediment communities showing the highest diversity and metal resistance in estuarine environments.
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https://jclub.com.au/a/42575174
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Regulatory mechanisms of N(2)O emissions from latosolic red soil by different ecotypes of earthworms: Insights from microbial diversity and metagenomic analysis.
Environmental pollution · 1 Oct 2026 · Journal Article
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https://jclub.com.au/a/42385829
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Microbial ecology of shallow groundwater ecosystems.
Nature Reviews Microbiology · 1 Oct 2026 · Review
Microbial communities in shallow groundwater ecosystems are highly diverse and crucial for biogeochemical cycles, yet their active processes and ecological roles remain poorly understood.
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https://jclub.com.au/a/42823524
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Metagenomic insights into biogeochemical functional potential and resistome dynamics of PM(2.5) microbial communities.
Environmental research · 1 Oct 2026 · Journal Article
Metagenomic analysis reveals that PM(2.5) microbial communities possess conserved biogeochemical functions but highly variable resistome profiles over four months.
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https://jclub.com.au/a/42575184
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Litter C/N ratio is associated with POC-to-MAOC transformation potential across forest types in subtropical restoration.
Environmental research · 1 Oct 2026 · Journal Article
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Growth form controls the seasonal stability of nutrient-pollution mitigation by submerged macrophytes in shallow lakes.
Environmental research · 1 Oct 2026 · Journal Article
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https://jclub.com.au/a/42603694
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Rethinking soil microbiome interventions through an ecological lens.
Nature Reviews Microbiology · 30 Sept 2026 · Journal Article
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https://jclub.com.au/a/42816540
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Evaluation of Parallel Accumulation-Serial Fragmentation methods for metaproteomics using a model microbiome
bioRxiv · 30 Sept 2026 · Preprint
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https://jclub.com.au/a/10.1101/2025.08.13.670166
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Dynamics of cell death due to N and P starvation across intra-clade diversity in Prochlorococcus
bioRxiv · 28 Sept 2026 · Preprint
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https://jclub.com.au/a/10.1101/2025.05.24.655613
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Nitrite reductase NirB mediates an unconventional nitrogen assimilation strategy to enhance adaptations of extremophile
bioRxiv · 28 Sept 2026 · Preprint
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https://jclub.com.au/a/10.64898/2026.09.23.753953
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Scalable single-cell metagenomic analysis with Bascet and Zorn
bioRxiv · 28 Sept 2026 · Preprint
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https://jclub.com.au/a/10.1101/2025.06.20.660799
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Bloom-forming bacteria heavily invest in anti-phage defense
bioRxiv · 26 Sept 2026 · Preprint
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https://jclub.com.au/a/10.64898/2026.09.26.754401
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Microbial community response and recovery through an aeration-cessation time series in a eutrophic estuary
bioRxiv · 25 Sept 2026 · Preprint
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https://jclub.com.au/a/10.64898/2026.09.24.754275
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HaloClassifier: integrating coding-signature features and k-mer composition for plasmid-chromosome discrimination in haloarchaeal genomes
bioRxiv · 25 Sept 2026 · Preprint
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https://jclub.com.au/a/10.64898/2026.09.21.753098
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Anoxygenic phototrophic Chlorobi use broad metabolic and resource acquisition strategies to support stable near-clonal blooms
bioRxiv · 25 Sept 2026 · Preprint
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Light-induced carotenogenesis enhances growth and high hydrostatic pressure tolerance in a deep-sea bacterium by reducing intracellular ROS.
Applied and environmental microbiology · 23 Sept 2026 · Journal Article
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https://jclub.com.au/a/42663466
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Vesicle-associated exudates from Alteromonas enhance growth and survival of Prochlorococcus in batch culture.
Applied and environmental microbiology · 23 Sept 2026 · Journal Article
Alteromonas macleodii EZ55 exudates, including vesicles, significantly enhance Prochlorococcus MIT9312 growth and survival, with effects observed across all growth phases.
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https://jclub.com.au/a/42549905
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Scalable Agricultural Microbiome Sampling: Operational Definitions, Pooling Strategies, and Preservation Methods
bioRxiv · 23 Sept 2026 · Preprint
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https://jclub.com.au/a/10.64898/2026.05.19.725853
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Diversification of biofilm architecture among freshwater Pararheinheimera isolates.
Applied and environmental microbiology · 23 Sept 2026 · Journal Article
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https://jclub.com.au/a/42663477
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Soil microbial growth rate, trophic strategy, and the oligotroph-copiotroph continuum.
Applied and environmental microbiology · 23 Sept 2026 · Journal Article
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https://jclub.com.au/a/42573262
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A dual methane production mechanism mediated by enzymatic catalysis and the Fenton reaction in the wood-rotting fungus Schizophyllum commune.
Applied and environmental microbiology · 23 Sept 2026 · Journal Article
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Soilless farming system design impacts the diversity and composition of microbiota.
Applied and environmental microbiology · 23 Sept 2026 · Journal Article
Different soilless farming system designs significantly influence microbial load and bacterial community composition, with drip irrigation systems showing the highest microbial counts.
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https://jclub.com.au/a/42549904
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From pristine bacteria to neo-transformants: Alterations in adaptive survival strategies and endogenous responses under re-stress.
Environmental research · 22 Sept 2026 · Journal Article
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https://jclub.com.au/a/42772354
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Rethinking evolutionary inference in metagenomic time series.
mSystems · 22 Sept 2026 · Journal Article
Misinterpretation of microbial ecological dynamics as rapid evolution occurs in metagenomic time series due to methodological limitations.
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