bioRxivJClub
Bioactivity foundation model for hit identification and hit-to-lead optimization from sequence data
bioRxiv · · Preprint · Open access
Koh, Koh + 9 more
Abstract ↗AI summary
The abstract is read at the publisher; the summary is JClub's.
PSICHIC+ predicts binding-affinity probability distributions from protein sequence and ligand SMILES, trained on ~82 million records, enabling millisecond virtual screening and hit-to-lead optimization without target-specific data.
- Why it matters: Large bioactivity archives are hard to learn from because assay readouts differ and data reliability varies, limiting how well sequence-only models can exploit heterogeneous measurements.
- What they did: The authors train PSICHIC+ on ~82 million protein–ligand records with a distributional objective that preserves quantitative resolution while accounting for reliability variation, then benchmark zero-shot screening and lab-in-the-loop acquisition.
- The result: In zero-shot virtual-screening, it improves enrichment versus regression/classification methods and matches leading structure-based approaches; distribution-guided acquisition boosts recovery under fixed budgets, and combining with Boltz-2 improves hit-to-lead affinity prediction.
The findingWhy it mattersWhat they didThe result
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