bioRxivJClub
Discovering Prognostic Risk Strata and Heterogeneous Progression Routes from Cross-Sectional Survival Data
bioRxiv · · Preprint · Open access
Alzaid, Wright + 1 more
Abstract ↗AI summary
The abstract is read at the publisher; the summary is JClub's.
GOTSurv infers patient-specific progression routes from cross-sectional survival data, stratifying TCGA patients into prognostic risk groups and revealing distinct within-stratum trajectories linked to rising risk.
- Why it matters: Longitudinal follow-up is often missing, and cross-sectional analyses can miss heterogeneous individual progression patterns.
- What they did: GOTSurv learns survival-risk rankings and automatically forms prognostic strata without predefined cut-offs, then applies unbalanced optimal transport to estimate feature changes tied to transitions toward higher-risk groups.
- The result: Across ten TCGA cancer cohorts (gene expression n=4,767; whole-slide images n=4,655) with external validation in two independent cohorts, it generally strengthens prognostic stratification versus established models while uncovering individualized progression trajectories within the same risk stratum.
The findingWhy it mattersWhat they didThe result
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- Open access