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Layer-Specific Source-Anchored Transfer Learning for Multi-Omics Survival Prediction in Younger Breast Cancer Patients
bioRxiv · · Preprint · Open access
Guo, Wang + 1 more
Abstract ↗AI summary
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LSAT-EN improves 2–4-year breast cancer survival prediction for patients aged <50, reaching AUCs up to 0.789 under high source-target heterogeneity (sigma^2=4).
- Why it matters: Younger patients are underrepresented, and survival models trained on older cohorts can lose accuracy when source and target differ.
- What they did: The authors used layer-specific source-anchored transfer learning (LSAT-EN) in group-correlated simulations and in TCGA-BRCA integrating 6 omics layers, evaluating AUC, Harrell’s C-index, and IPCW AUC.
- The result: In TCGA-BRCA, LSAT-EN improved discrimination versus overall and individual EN across binary and Cox models for all time horizons and source age groups, and it highlighted mRNA/miRNA biomarkers and miRNA–mRNA pairs.
The findingWhy it mattersWhat they didThe result
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