Nucleic Acids ResJClub
OrganiZymeDB: a comprehensive database of enzyme stability and function in the presence of organic solvents.
Nucleic Acids Research · · Journal Article
Debruyne, Pucci
Abstract ↗AI summary
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OrganiZymeDB compiles 28,121 manually curated measurements across 704 proteins, linking enzyme stability and function to organic solvent identity and volume fraction for industrial biocatalysis research.
- Why it matters: Limited enzyme tolerance to organic solvents hampers industrial biocatalysis, and decades of experiments lacked a public, systematic resource to enable reuse and large-scale analyses.
- What they did: The database aggregates data from 646 publications and annotates each entry with assay type, solvent details, solution composition, pH, temperature, substrates/products, production method, and protein 3D structure with cross-links.
- The result: OrganiZymeDB provides accessible solvent-compatibility data for enzyme selection and a curated dataset to develop and evaluate computational methods for predicting enzyme solvent tolerance.
The findingWhy it mattersWhat they didThe result
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