bioRxivJClub
An evidence-governed agent harness for spatial transcriptomics prioritizes ICAM-1 as a target in lung fibrosis
bioRxiv · · Preprint
Jung, Parimon + 3 more
Abstract ↗AI summary
The abstract is read at the publisher; the summary is JClub's.
DeepMAST identified ICAM1 as a candidate therapeutic target in idiopathic pulmonary fibrosis (IPF) Visium spatial transcriptomics, supported by spatial analysis and curated external evidence.
- Why it matters: Spatial transcriptomics yields many candidate targets, but functional validation needs cross-domain expertise and verification across biological resources.
- What they did: DeepMAST is an evidence-governed multi-agent AI system that orchestrates spatial analysis using MCP-enabled tools and locally deployed LLM Skills with RAG and guardrails. It was evaluated on controlled benchmarks and applications to prostate cancer, breast cancer, and IPF Visium datasets.
- The result: In the IPF application, ICAM1 nomination was supported by human-tissue immunostaining and ICAM-1 blockade in a preclinical fibrosis model, and DeepMAST improved evidence retrieval and reduced unsupported interpretations versus baselines.
The findingWhy it mattersWhat they didThe result