Nucleic Acids ResJClub
NTDB: a curated database of natural transformation machinery and regulatory genes in prokaryotes.
Nucleic Acids Research · · Journal Article
Guan, Wang + more
Abstract ↗AI summary
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NTDB catalogs 118 naturally transformable prokaryotic species, 1072 transformation-associated genes, and 10 DNA uptake motifs, providing a comprehensive resource for natural transformation research.
- Why it matters: Understanding natural transformation is crucial because it drives evolution, adaptation, and the spread of traits like antibiotic resistance in prokaryotes, yet dedicated data resources have been lacking.
- What they did: The database integrates experimentally validated data, homology-based searches across 12,310 strains, and motif analysis, along with online tools for predicting transformation genes and motifs.
- The result: NTDB enables mechanistic studies of transformation machinery and competence regulation, supporting research into microbial evolution, gene transfer, and clinical trait dissemination.
The findingWhy it mattersWhat they didThe result