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Beyond native sequence recovery: Improved modeling of the sequence-energy landscape of protein structures.

Proceedings of the National Academy of Sciences · 7 July 2026 · Journal Article · Open access

Birnbaum, Keating

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ABAG-Rank: improving model selection of AlphaFold antibody-antigen complexes by learning to rank.
Bioinformatics · 31 Aug 2026 · Journal Article
ABAG-Rank significantly outperforms AlphaFold3 internal scoring and existing deep learning baselines for model selection of antibody–antigen complexes from AlphaFold-predicted ensembles.
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